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The Foot rot/Bakanae/Foolish seedling disease occurs most frequently when infested seeds (i.e., seeds covered in fungal spores) are used, but also can occur when the pathogen is present on plant material or in the soil. It spreads through wind or water that carries the fungal spores from one plant to another.

Bakanae can also be transmitted during farm operations such as harvesting infected plants allowing fungal spores to spread to the healthy seeds, and soaking seeds in water that contains the fungus.

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